Preheat oven to 400 degrees Fahrenheit.
Saute onion in a pan on medium heat for about 3 minutes, add bell pepper and saute about 2 minutes.
In a muffin tin, evenly distribute diced peppers and onions throughout 8 cups.
In a bowl whisk eggs and crushed tomatoes.
Add in seasoning, ½ of cheese, and flour.
Pour mixture evenly throughout 8 cups in muffin tin.
Bake cups for approximately 30 minutes or until eggs are pierced with no residue on fork.
Sprinkle baked eggs with remainder of cheese and allow to melt before serving.